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Ultraviolet image of an
onion cell
How
a microscope photometer
works
Uses of
a microscope photometer
Units of Microscope
Photometry
CRAIC
Microscope Photometer

Jablonski Energy Level
Diagram Depicting Absorbance
and Fluorescence Transitions

Histogram of photometric
data
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When photons interact with
matter, such as when light
is focused onto a sample in
a microscope, it can either
be reflected, absorbed and
then re-emitted or it
can be scattered.
Photometry measures the
intensity of all the light,
within a certain bandpass,
from a sample.
Absorbance
Photometry
is the study of the
quantized energy transfer
between radiation and
matter. The energy of
light is directly related to
its wavelength by the
Einstein-Planck
relationship:

The electromagnetic energy
of a photon is inversely
proportional to its
wavelength. In other
words, short wavelength or
blue light is higher energy
than red light. Due to
the differences, the light
causes different effects
when it interacts with
molecules. In the
ultraviolet-visible region,
electronic transitions are
mainly observed.
Namely, when a photon of the
proper energy is absorbed by
a molecule, an electron is
excited to higher energy
level or shell. This
is most commonly described
in what is called a
Jablonski diagram.
For a photon to be absorbed,
the energy of the photon
must correspond with the
difference in energy between
the ground state and the
excited state to which the
electron transfers. As
can be seen in the diagram,
the electron jumps to the
first excited state (S1)
when an electron of the
corresponding energy is
absorbed. If a photon
of a higher energy, one that
corresponded between the
difference between the
ground and say the second
excited state (S2), were
absorbed, the electron would
jump the S2 state.
This process is called
absorbance.
The energy levels of the
molecules are due to the
types of atoms and how they
are bound to one another.
Additionally, the shape of
the molecule as well as its
environment can also
play a part in structuring
the energy levels. In
fact, a dye chemist can
"tune" a dye molecule by
adding or removing
functional groups or atoms
of a molecule, thereby
changing its color.
Fluorescence
After the electron has
jumped to the excited state,
it then decays by internal
conversion to the lowest
excited state, S1.
From there it can decay back
to the ground state by a
number of paths. The
most common is a
radiationless transition
whereby the electron drops
from the S1 excited state to
the ground state losing
energy without the emission
of a photon. However,
when the electron drops from
the S1 state to the ground
state with the
emission of a photon, the
process is called
fluorescence. It is a
rapid process and
fluorescence lifetimes
usually follow first order
kinetic rules. It
should be noted that the
fluorescence intensity is
governed by many factors,
some of which include
excitation wavelength,
quantum yield, quenching
materials and even molecular
structure.
Reflectance
Reflectance photometry
simply measures all of the
light reflected from the
sample. The portion
that is not reflected may
have been absorbed (see
above) or even transmitted
through the sample (if
transparent to that
wavelength of light) or even
scattered. Reflected
light may be divided into
two types: specular and
diffuse. Simply put,
specular reflectance is like
the reflectance from a
mirror. The light is
reflected at the same angle
as it impinges upon the
mirror surface.
Diffuse reflectance is
similar to what occurs with
white paper. Light is
effectively reflected at all
angles.
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